2002 McArdle Publications

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Ahlquist, P. RNA-Dependent RNA Polymerases, Viruses, and RNA Silencing. Science, 296: 1270-1273, 2002.

Angeletti, P. C., Kim, K., Fernandes, F. J., and Lambert, P. F. Stable Replication of Papillomavirus Genomes in Saccharomyces cerevisiae. J. Virol., 76: 3350-3358, 2002.

Anthony, L. C., and Burgess, R. R. Conformational Flexibility in s⁷⁰ Region 2 during Transcription Initiation. J. Biol. Chem., 277: 46433-46441, 2002.

Anthony, L. C., Dombkowski, A. A., and Burgess, R. R. Using Disulfide Bond Engineering To Study Conformational Changes in the b'260-309 Coiled-Coil Region of Escherichia coli RNA Polymerase during s⁷⁰ Binding. J. Bacteriol., 184: 2634-2641, 2002.

Ariazi, E. A., Clark, G. M., and Mertz, J. E. Estrogen-related Receptor a and Estrogen-related Receptor g Associate with Unfavorable and Favorable Biomarkers, Respectively, in Human Breast Cancer. Cancer Res., 62: 6510-6518, 2002.

Bergendahl, V., Anthony, L. C., Heyduk, T., and Burgess, R. R. On-column Tris(2-Carboxyethyl)Phosphine Reduction and IC5-Maleimide Labeling during Purification of a RpoC Fragment on a Nickel-Nitrilotriacetic Acid Column. Anal. Biochem., 307: 368-374, 2002.

Bradfield, C. A.  Gene Targeting.  Current Protocols in Toxicology.  John Wiley & Sons Publishing, 2002.

Burgess, R. R., and Thompson, N. E. Advances in Gentle Immunoaffinity Chromatography. Curr. Opin. Biotechnol., 13: 304-308, 2002.

Chi, Y., Diaz-Griffero, F., Wang, C., Young, J. A. T., and Brojatsch, J. An NF-kB-Dependent Survival Pathway Protects against Cell Death Induced by TVB Receptors for Avian Leukosis Viruses. J. Virol., 76: 5581-5587, 2002.

Dragan, Y. P., and Pitot, H. C. The Effects of Triphenylethylene Antiestrogens on Parameters of Multistage Hepatocarcinogenesis in the Rat. In: V. C. Jordan and B. J. A. Furr (Eds.), Hormone Therapy in Breast and Prostate Cancer, Chap. 5, pp. 83-131. Humana Press, Inc., 2002.

Eberhardy, S. R., and Farnham, P. J. Myc Recruits P-TEFb to Mediate the Final Step in the Transcriptional Activation of the cad Promoter. J. Biol. Chem., 277: 40156-40162, 2002.

Elegbede, J. A., and Gould, M. N. Monoterpenes Reduced Adducts Formation in Rats Exposed to Aflatoxin B₁. Afr. J. Biotechnol., 1: 46-49, 2002. http://www.academicjournals.org/AJB/abstracts/abstracts2002/Decemberabstracts2002/Elegbede%20and%20Gould.htm

Farnham, P. J. In Vivo Assays to Examine Transcription Factor Localization and Target Gene Specificity. Methods, 26: 1-2, 2002.

Farrell, M. L., and Mertz, J. E. Cell Type-Specific Replication of Simian Virus 40 Conferred by Hormone Response Elements in the Late Promoter. J. Virol., 76: 6762-6770, 2002.

Farrell, M. L., and Mertz, J. E. Hormone Response Element in SV40 Late Promoter Directly Affects Synthesis of Early as Well as Late Viral RNAs. Virology, 297: 307-318, 2002.

Habig, J. W., and Loeb, D. D. Small DNA Hairpin Negatively Regulates In Situ Priming during Duck Hepatitis B Virus Reverse Transcription. J. Virol., 76: 980-989, 2002.

Haigis, K. M., Caya, J. G., Reichelderfer, M., and Dove, W. F. Intestinal Adenomas Can Develop with a Stable Karyotype and Stable Microsatellites. Proc. Natl. Acad. Sci. USA, 99: 8927-8931, 2002.

Havert, M. B., Ji, L., and Loeb, D. D. Analysis of Duck Hepatitis B Virus Reverse Transcription Indicates a Common Mechanism for the Two Template Switches during Plus-Strand DNA Synthesis. J. Virol., 76: 2763-2769, 2002.

Hoff, P. D., Halberg, R. B., Shedlovsky, A., Dove, W. F., and Newton, M. A. Identifying Carriers of a Genetic Modifier Using Nonparametric Bayesian Methods. In: C. Gatsonis, R. E. Kass, B. Carlin, A. Carriquiry, A. Gelman, I. Verdinelli, and M. West (Eds.), Lecture Notes in Statistics, Vol. 162 (Series): Case Studies in Bayesian Statistics, Vol. 5, pp. 329-343. New York: Springer-Verlag, 2002. http://www.springer.com/statistics/statistical+theory+and+methods/book/978-0-387-95169-0?detailsPage=toc

Kaykas, A., Worringer, K., and Sugden, B. LMP-1's Transmembrane Domains Encode Multiple Functions Required for LMP-1's Efficient Signaling. J. Virol., 76: 11551-11560, 2002.

Kim, K., and Lambert, P. F. E1 Protein of Bovine Papillomavirus 1 Is Not Required for the Maintenance of Viral Plasmid DNA Replication. Virology, 293: 10-14, 2002.

Kim, K., Lindstrom, M. J., and Gould, M. N. Regions of H- and K-Ras That Provide Organ Specificity/Potency in Mammary Cancer Induction. Cancer Res., 62: 1241-1245, 2002.

Kinzler, E. R., Theiler, R. N., and Compton, T. Expression and Reconstitution of the gH/gL/gO Complex of Human Cytomegalovirus. J. Clin. Virol., 25(Suppl. 2): S87-S95, 2002.

Klucking, S., Adkins, H. B., and Young, J. A. T. Resistance to Infection by Subgroups B, D, and E Avian Sarcoma and Leukosis Viruses Is Explained by a Premature Stop Codon within a Resistance Allele of the tvb Receptor Gene. J. Virol., 76: 7918-7921, 2002.

Knauss, D. J., and Young, J. A. T. A Fifteen-Amino-Acid TVB Peptide Serves as a Minimal Soluble Receptor for Subgroup B Avian Leukosis and Sarcoma Viruses. J. Virol., 76: 5404-5410, 2002.

Kraus, R. J., Ariazi, E. A., Farrell, M. L., and Mertz, J. E. Estrogen-related Receptor a1 Actively Antagonizes Estrogen Receptor-regulated Transcription in MCF-7 Mammary Cells. J. Biol. Chem., 277: 24826-24834, 2002.

Lemm, I., and Ross, J. Regulation of c-myc mRNA Decay by Translational Pausing in a Coding Region Instability Determinant. Mol. Cell. Biol., 22: 3959-3969, 2002.

Lindenbach, B. D., Sgro, J.-Y., and Ahlquist, P. Long-Distance Base Pairing in Flock House Virus RNA1 Regulates Subgenomic RNA3 Synthesis and RNA2 Replication. J. Virol., 76: 3905-3919, 2002.

Liu, N., Ostrow, K. M., and Loeb D. D. Identification and Characterization of a Novel Replicative Intermediate of Heron Hepatitis B Virus. Virology, 295: 348-359, 2002.

Loeb, D. D., Mack, A. A., and Tian, R. A Secondary Structure That Contains the 5' and 3' Splice Sites Suppresses Splicing of Duck Hepatitis B Virus Pregenomic RNA. J. Virol., 76: 10195-10202, 2002.

Lopper, M., and Compton, T. Disulfide Bond Configuration of Human Cytomegalovirus Glycoprotein B. J. Virol., 76: 6073-6082, 2002.

Miller, D. J., and Ahlquist, P. Flock House Virus RNA Polymerase Is a Transmembrane Protein with Amino-Terminal Sequences Sufficient for Mitochondrial Localization and Membrane Insertion. J. Virol., 76: 9856-9867, 2002.

Mueller-Hill, K., and Loeb, D. D. cis-Acting Sequences 5E, M, and 3E Interact to Contribute to Primer Translocation and Circularization during Reverse Transcription of Avian Hepadnavirus DNA. J. Virol., 76: 4260-4266, 2002.

Nguyen, M., Song, S., Liem, A., Androphy, E., Liu, Y., and Lambert, P. F. A Mutant of Human Papillomavirus Type 16 E6 Deficient in Binding a-Helix Partners Displays Reduced Oncogenic Potential In Vivo. J. Virol., 76: 13039-13048, 2002.

Ostrow, K. M., and Loeb, D. D. Characterization of the cis-Acting Contributions to Avian Hepadnavirus RNA Encapsidation. J. Virol., 76: 9087-9095, 2002.

Pitot, H. C. Fundamentals of Oncology, 4th edition. New York: Marcel Dekker, Inc., 2002. (998 pp.)

Price, B. D., Ahlquist, P., and Ball, L. A. DNA-Directed Expression of an Animal Virus RNA for Replication-Dependent Colony Formation in Saccharomyces cerevisiae. J. Virol., 76: 1610-1616, 2002.

Raghavachari, N., and Fahl, W. E. Targeted Gene Delivery to Skin Cells In Vivo: A Comparative Study of Liposomes and Polymers as Delivery Vehicles. J. Pharm. Sci., 91: 615-622, 2002.

Schwartz, M., Chen, J., Janda, M., Sullivan, M., den Boon, J., and Ahlquist, P. A Positive-Strand RNA Virus Replication Complex Parallels Form and Function of Retrovirus Capsids. Mol. Cell, 9: 505-514, 2002.

Shen, A. L., O'Leary, K. A., and Kasper, C. B. Association of Multiple Developmental Defects and Embryonic Lethality with Loss of Microsomal NADPH-Cytochrome P450 Oxidoreductase. J. Biol. Chem., 277: 6536-6541, 2002.

Shi, W., and Gould, M. N. Induction of Cytostasis in Mammary Carcinoma Cells Treated with the Anticancer Agent Perillyl Alcohol. Carcinogenesis, 23: 131-142, 2002.

Shumway, S. D., Berchtold, C. M., Gould, M. N., and Miyamoto, S. Evidence for Unique Calmodulin-Dependent Nuclear Factor-kB Regulation in WEHI-231 B Cells. Mol. Pharmacol., 61: 177-185, 2002.

Snitkovsky, S., and Young, J. A. T. Targeting Retroviral Vector Infection to Cells That Express Heregulin Receptors Using a TVA-Heregulin Bridge Protein. Virology, 292: 150-155, 2002.

Sugden, B. In the Beginning: a Viral Origin Exploits the Cell. Trends Biochem. Sci., 27: 1-3, 2002.

Theiler, R. N., and Compton, T. Distinct Glycoprotein O Complexes Arise in a Post-Golgi Compartment of Cytomegalovirus-Infected Cells. J. Virol., 76: 2890-2898, 2002.

Thomas, R. S., Hayes, K. R., Zastrow, G. M., Tran, K., Penn, S. G., Rank, D. R., and Bradfield, C. A. Application of DNA Microarrays for Predicting Toxicity and Evaluating Cross-Species Extrapolation. In: T. Inoue and W. D. Pennie (Eds.), Toxicogenomics, pp. 31-38. Tokyo: Springer-Verlag, 2002.

Thomas, R. S., Penn, S. G., Holden, K., Bradfield, C. A., and Rank, D. R. Sequence Variation and Phylogenetic History of the Mouse Ahr Gene. Pharmacogenetics, 12: 151-163, 2002.

Thomas, R. S., Rank, D. R., Penn, S. G., Craven, M. W., Drinkwater, N. R., and Bradfield, C. A. Developing Toxicologically Predictive Gene Sets Using cDNA Microarrays and Bayesian Classification. Methods Enzymol., 357: 198-205, 2002.

Thomas, R. S., Rank, D. R., Penn, S. G., Zastrow, G. M., Hayes, K. R., Hu, T., Pande, K., Lewis, M., Jovanovich, S. B., and Bradfield, C. A. Application of Genomics to Toxicology Research. Environ. Health Perspect., 110(Suppl.6): 919-923, 2002.

Thompson, T. A., Haag, J. D., Lindstrom, M. J., Griep, A. E., Lohse, J. K., and Gould, M. N. Decreased Susceptibility to NMU-induced Mammary Carcinogenesis in Transgenic Rats Carrying Multiple Copies of a Rat ras Gene Driven by the Rat Harvey ras Promoter. Oncogene, 21: 2797-2804, 2002.

Walisser, J. A., and Bradfield, C. A. The PAS Protein Superfamily. In: J. P. Vanden Heuvel, G. H. Perdew, W. B. Mattes, and W. F. Greenlee (Eds.), Comprehensive Toxicology, Vol. 14: Cellular and Molecular Toxicology, pp. 107-117. Elsevier Science BV, 2002.

Walisser, J. A., and Bradfield, C. A. The Aryl Hydrocarbon Receptor: A Model of Gene-Environment Interactions. In: J. P. Vanden Heuvel, G. H. Perdew, W. B. Mattes, and W. F. Greenlee (Eds.), Comprehensive Toxicology, Vol. 14, Cellular and Molecular Toxicology, pp. 119-132. Elsevier Science BV, 2002.

Walker, M. K., Bradfield, C. A., and Walisser, J. A. Hypoxia Regulation of Gene Expression through HIF1 Signaling. In: J. P. Vanden Heuvel, G. H. Perdew, W. B. Mattes, and W. F. Greenlee, (Eds.), Comprehensive Toxicology, Vol. 14: Molecular and Cellular Toxicology, pp. 389-407. Elsevier Science BV, 2002.

Watson, P. A., Kim, K., Chen, K.-S., and Gould, M. N. Androgen-dependent Mammary Carcinogenesis in Rats Transgenic for the Neu Proto-Oncogene. Cancer Cell, 2: 67-79, 2002.

Weinmann, A. S., and Farnham, P. J. Identification of Unknown Target Genes of Human Transcription Factors using Chromatin Immunoprecipitation. Methods, 26: 37-47, 2002.

Weinmann, A. S., Yan, P. S., Oberley, M. J., Huang, T. H.-M., and Farnham, P. J. Isolating Human Transcription Factor Targets by Coupling Chromatin Immunoprecipitation and CpG Island Microarray Analysis. Genes Dev., 16: 235-244, 2002.

Wells, J., and Farnham, P. J. Characterizing Transcription Factor Binding Sites using Formaldehyde Crosslinking and Immunoprecipitation. Methods, 26: 48-56, 2002.

Wells, J., Graveel, C. R., Bartley, S. M., Madore, S. J., and Farnham, P. J. The Identification of E2F1-specific Target Genes. Proc. Natl. Acad. Sci. USA, 99: 3890-3895, 2002.

Wild, J., Hradecna, Z., and Szybalski, W. Conditionally Amplifiable BACs: Switching From Single-Copy to High-Copy Vectors and Genomic Clones. Genome Res., 12: 1434-1444, 2002.

Young, J. A. T. Targeting Retroviral Vectors Using Molecular Bridges. In: D. T. Curiel and J. T. Douglas (Eds.), Vector Targeting for Therapeutic Gene Delivery, pp. 253-266. Wiley-Liss, Inc., 2002. http://www3.interscience.wiley.com/cgi-bin/summary/104087764/SUMMARY

Young, J. A., and Collier, R. J. Attacking Anthrax. Sci. Am., 286: 48-50, 54-59, 2002.

Young, M. R., Farrell, L., Lambert, P., Awasthi, P., and Colburn, N. H. Protection Against Human Papillomavirus Type 16-E7 Oncogene-Induced Tumorigenesis by In Vivo Expression of Dominant-Negative c-jun. Mol. Carcinog., 34: 72-77, 2002.