2003 McArdle Publications

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Ahlquist, P., Noueiry, A. O., Lee, W.-M., Kushner, D. B., and Dye, B. T. Host Factors in Positive-Strand RNA Virus Genome Replication. J. Virol., 77: 8181-8186, 2003.

Anthony, L. C., Foley, K. M., Thompson, N. E., and Burgess, R. R. Expression, Purification of, and Monoclonal Antibodies to s Factors from Escherichia coli. Methods Enzymol., 370: 181-192, 2003.

Balsitis, S. J., Sage, J., Duensing, S., Münger, K., Jacks, T., and Lambert, P. F. Recapitulation of the Effects of the Human Papillomavirus Type 16 E7 Oncogene on Mouse Epithelium by Somatic Rb Deletion and Detection of pRb-Independent Effects of E7 In Vivo. Mol. Cell. Biol., 23: 9094-9103, 2003.

Barnard, R. J. O., and Young, J. A. T. Alpharetrovirus Envelope-Receptor Interactions. Curr. Top. Microbiol. Immunol., 281: 107-136, 2003.

Bergendahl, V., and Burgess, R. R. Studying Sigma-Core Interactions in Escherichia coli RNA Polymerase by Electrophoretic Shift Assays and Luminescence Resonance Energy Transfer. Methods Enzymol., 370: 192-205, 2003.

Bergendahl, V., Glaser, B. T., and Burgess, R. R. A Fast Western Blot Procedure Improved for Quantitative Analysis by Direct Fluorescence Labeling of Primary Antibodies. J. Immunol. Methods, 277: 117-125, 2003.

Bergendahl, V., Heyduk, T., and Burgess, R. R. Luminescence Resonance Energy Transfer-Based High-Throughput Screening Assay for Inhibitors of Essential Protein-Protein Interactions in Bacterial RNA Polymerase. Appl. Environ. Microbiol., 69: 1492-1498, 2003.

Bergendahl, V., Thompson, N. E., Foley, K. M., Olson, B. M., and Burgess, R. R. A Cross-Reactive Polyol-Responsive Monoclonal Antibody Useful for Isolation of Core RNA Polymerase from Many Bacterial Species. Protein Expr. Purif., 31: 155-160, 2003.

Bittinger, M. A., Nguyen, L. P., and Bradfield, C. A. Aspartate Aminotransferase Generates Proagonists of the Aryl Hydrocarbon Receptor. Mol. Pharmacol., 64: 550-556, 2003.

Boivin, G. P., Washington, K., Yang, K., Ward, J. M., Pretlow, T. P., Russell, R., Besselsen, D. G., Godfrey, V. L., Doetschman, T., Dove, W. F., Pitot, H. C., Halberg, R. B., Itzkowitz, S. H., Groden, J., and Coffey, R. J. Pathology of Mouse Models of Intestinal Cancer: Consensus Report and Recommendations. Gastroenterology, 124: 762-777, 2003.

Bradfield, C. A. Gene Targeting. Introduction. In: M. D. Maines, L. G. Costa, E. Hodgson, D. J. Reed, and I. G. Sipes (Eds.), Current Protocols in Toxicology, Chap. 15, pp. 15.0.1-15.0.2. John Wiley & Sons, Inc., 2003. Print Publication Date: November 2001; Online Posting Date: February 2002; Copyright Date 2003. http://www.mrw.interscience.wiley.com/emrw/9780471140856/cp/cptx/article/tx1500/current/html

Bradley, K. A., and Young, J. A. T. Anthrax Toxin Receptor Proteins. Biochem. Pharmacol., 65: 309-314, 2003.

Bradley, K. A., Mogridge, J., Rainey, G. J. A., Batty, S., and Young, J. A. T. Binding of Anthrax Toxin to Its Receptor Is Similar to a Integrin-Ligand Interactions. J. Biol. Chem., 278: 49342-49347, 2003.

Brake, T., Connor, J. P., Petereit, D. G., and Lambert, P. F. Comparative Analysis of Cervical Cancer in Women and in a Human Papillomavirus-Transgenic Mouse Model: Identification of Minichromosome Maintenance Protein 7 as an Informative Biomarker for Human Cervical Cancer. Cancer Res., 63: 8173-8180, 2003.

Bugni, J. M., and Drinkwater, N. R. Representational Difference Analysis of Gene Expression. In: W. S. El-Deiry (Ed.), Methods in Molecular Biology, Vol. 222: Tumor Suppressor Genes: Pathways and Isolation Strategies, Chap. 24, pp. 385-397. Totowa, NJ: Humana Press Inc., 2003.

Bunger, M. K., Moran, S. M., Glover, E., Thomae, T. L., Lahvis, G. P., Lin, B. C., and Bradfield, C. A. Resistance to 2,3,7,8-Tetrachlorodibenzo-p-dioxin Toxicity and Abnormal Liver Development in Mice Carrying a Mutation in the Nuclear Localization Sequence of the Aryl Hydrocarbon Receptor. J. Biol. Chem., 278: 17767-17774, 2003.

Chen, J., Noueiry, A., and Ahlquist, P. An Alternate Pathway for Recruiting Template RNA to the Brome Mosaic Virus RNA Replication Complex. J. Virol., 77: 2568-2577, 2003.

Chen, X., Halberg, R. B., Ehrhardt, W. M., Torrealba, J., and Dove, W. F. Clusterin as a Biomarker in Murine and Human Intestinal Neoplasia. Proc. Natl. Acad. Sci. USA, 100: 9530-9535, 2003.

Chiaverotti, T. A., and Drinkwater, N. R. C57BR/cdJ Hepatocarcinogen Susceptibility Genes Act Cell-Autonomously in C57BR/cdJ C57BL/6J Chimeras. Cancer Res., 63: 4914-4919, 2003.

Clark, S. S., Zhong, L., Filiault, D., Perman, S., Ren, Z., Gould, M., and Yang, X. Anti-Leukemia Effect of Perillyl Alcohol in Bcr/Abl-Transformed Cells Indirectly Inhibits Signaling through Mek in a Ras- and Raf-Independent Fashion. Clin. Cancer Res., 9: 4494-4504, 2003.

Collier, R. J., and Young, J. A. T. Anthrax Toxin. Annu. Rev. Cell Dev. Biol., 19: 45-70, 2003.

Compton, T., Kurt-Jones, E. A., Boehme, K. W., Belko, J., Latz, E., Golenbock, D. T., and Finberg, R. W. Human Cytomegalovirus Activates Inflammatory Cytokine Responses via CD14 and Toll-Like Receptor 2. J. Virol., 77: 4588-4596, 2003.

Dirmeier, U., Neuhierl, B., Kilger, E., Reisbach, G., Sandberg, M. L., and Hammerschmidt, W. Latent Membrane Protein 1 Is Critical for Efficient Growth Transformation of Human B Cells by Epstein-Barr Virus. Cancer Res., 63: 2982-2989, 2003.

Dove, W. Aurora and the Hunt for Cancer-modifying Genes. Nat. Genet., 34: 353-354, 2003.

Genther, S. M., Sterling, S., Duensing, S., Münger, K., Sattler, C., and Lambert, P. F. Quantitative Role of the Human Papillomavirus Type 16 E5 Gene during the Productive Stage of the Viral Life Cycle. J. Virol., 77: 2832-2842, 2003.

Graveel, C. R., Harkins-Perry, S. R., Acevedo, L. G., and Farnham, P. J. Identification and Characterization of CRG-L2, a New Marker for Liver Tumor Development. Oncogene, 22: 1730-1736, 2003.

Haag, J. D., Shepel, L. A., Kolman, B. D., Monson, D. M., Benton, M. E., Watts, K. T., Waller, J. L., Lopez-Guajardo, C. C., Samuelson, D. J., and Gould, M. N. Congenic Rats Reveal Three Independent Copenhagen Alleles within the Mcs1 Quantitative Trait Locus That Confer Resistance to Mammary Cancer. Cancer Res., 63: 5808-5812, 2003.

Habig, J. W., and Loeb, D. D. The Conformation of the 3' End of the Minus-Strand DNA Makes Multiple Contributions to Template Switches during Plus-Strand DNA Synthesis of Duck Hepatitis B Virus. J. Virol., 77: 12401-12411, 2003.

Habig, J. W., and Loeb, D. D. Template Switches during Plus-Strand DNA Synthesis of Duck Hepatitis B Virus Are Influenced by the Base Composition of the Minus-Strand Terminal Redundancy. J. Virol., 77: 12412-12420, 2003.

Haigis, K. M., and Dove, W. F. A Robertsonian Translocation Suppresses a Somatic Recombination Pathway to Loss of Heterozygosity. Nat. Genet., 33: 33-39, 2003.

Kendziorski, C. M., Newton, M. A., Lan, H., and Gould, M. N. On Parametric Empirical Bayes Methods for Comparing Multiple Groups Using Replicated Gene Expression Profiles. Statist. Med., 22: 3899-3914, 2003.

Kennedy, G., and Sugden, B. EBNA-1, a Bifunctional Transcriptional Activator. Mol. Cell. Biol., 23: 6901-6908, 2003.

Kennedy, G., and Sugden, B. Virus-based Vectors for Gene Expression in Mammalian Cells: Epstein-Barr Virus. In: S. C. Makrides (Ed.), New Comprehensive Biochemistry, Vol. 38: Gene Transfer and Expression in Mammalian Cells, Chap. 3.2, pp. 55-70. Elsevier Science B.V., 2003. http://www.elsevier.com/wps/find/bookdescription.cws_home/672847/description#toc

Kennedy, G., Komano, J., and Sugden, B. Epstein-Barr Virus Provides a Survival Factor to Burkitt's Lymphomas. Proc. Natl. Acad. Sci. USA, 100: 14269-14274, 2003.

Kim, K., Garner-Hamrick, P. A., Fisher, C., Lee, D., and Lambert, P. F. Methylation Patterns of Papillomavirus DNA, Its Influence on E2 Function, and Implications in Viral Infection. J. Virol., 77: 12450-12459, 2003.

Kirmizis, A., Bartley, S. M., and Farnham, P. J. Identification of the Polycomb Group Protein SU(Z)12 as a Potential Molecular Target for Human Cancer Therapy. Mol. Cancer Ther., 2: 113-121, 2003.

Kraus, R. J., Perrigoue, J. G., and Mertz, J. E. ZEB Negatively Regulates the Lytic-Switch BZLF1 Gene Promoter of Epstein-Barr Virus. J. Virol., 77: 199-207, 2003.

Kushner, D. B., Lindenbach, B. D., Grdzelishvili, V. Z., Noueiry, A. O., Paul, S. M., and Ahlquist, P. Systematic, Genome-Wide Identification of Host Genes Affecting Replication of a Positive-Strand RNA Virus. Proc. Natl. Acad. Sci. USA, 100: 15764-15769, 2003.

Lam, N., and Sugden, B. CD40 and Its Viral Mimic, LMP1: Similar Means to Different Ends. Cell. Signal., 15: 9-16, [2002] 2003.

Lam, N., and Sugden, B. LMP1, a Viral Relative of the TNF Receptor Family, Signals Principally from Intracellular Compartments. EMBO J., 22: 3027-3038, 2003.

Lee, W.-M., and Ahlquist, P. Membrane Synthesis, Specific Lipid Requirements, and Localized Lipid Composition Changes Associated with a Positive-Strand RNA Virus RNA Replication Protein. J. Virol., 77: 12819-12828, 2003.

Liu, B. Y., Kim, Y. C., Leatherberry, V., Cowin, P., and Alexander, C. M. Mammary Gland Development Requires Syndecan-1 to Create a b-Catenin/TCF-Responsive Mammary Epithelial Subpopulation. Oncogene, 22: 9243-9253, 2003.

Liu, N., Tian, R., and Loeb, D. D. Base Pairing Among Three cis-Acting Sequences Contributes to Template Switching during Hepadnavirus Reverse Transcription. Proc. Natl. Acad. Sci. USA, 100: 1984-1989, 2003.

Malcolm, K. M., Gill, J., Leggatt, G. R., Boyd, R., Lambert, P., and Frazer, I. H.  Expression of the HPV16E7 Oncoprotein by Thymic Epithelium Is Accompanied by Disrupted T Cell Maturation and a Failure of the Thymus to Involute with Age.  Clin. Dev. Immunol., 10:  91-103, 2003.

Manoharan, H., Babcock, K., Willi, J., and Pitot, H. C. Biallelic Expression of the H19 Gene During Spontaneous Hepatocarcinogenesis in the Albumin SV40 T Antigen Transgenic Rat. Mol. Carcinog., 38: 40-47, 2003.

Mao, D. Y. L., Watson, J. D., Yan, P. S., Barsyte-Lovejoy, D., Khosravi, F., Wong, W. W.-L., Farnham, P. J., Huang, T. H.-M., and Penn, L. Z. Analysis of Myc Bound Loci Identified by CpG Island Arrays Shows that Max Is Essential for Myc-Dependent Repression. Curr. Biol., 13: 882-886, 2003.

Masuda, T., Ogawa, H., Matsushima, T., Kawamata, S., Sasahara, M., Kuroda, K., Suzuki, Y., Takata, Y., Yamazaki, M., Takusagawa, F., and Pitot, H. C. Localization and Hormonal Control of Serine Dehydratase during Metabolic Acidosis Differ Markedly From Those of Phosphoenolpyruvate Carboxykinase in Rat Kidney. Int. J. Biochem. Cell Biol., 35: 1234-1247, 2003.

McFarlin, D. R., and Gould, M. N. Rat Mammary Carcinogenesis Induced by in Situ Expression of Constitutive Raf Kinase Activity is Prevented by Tethering Raf to the Plasma Membrane. Carcinogenesis, 26: 1149-1153, 2003.

McFarlin, D. R., Lindstrom, M. J., and Gould, M. N. Affinity with Raf is Sufficient for Ras to Efficiently Induce Rat Mammary Carcinomas. Carcinogenesis, 24: 99-105, 2003.

Mendrysa, S. M., McElwee, M. K., Michalowski, J., O'Leary, K. A., Young, K. M., and Perry M. E. mdm2 Is Critical for Inhibition of p53 during Lymphopoiesis and the Response to Ionizing Irradiation. Mol. Cell. Biol., 23: 462-473, 2003.

Middleton, K., Peh, W., Southern, S., Griffin, H., Sotlar, K., Nakahara, T., El-Sherif, A., Morris, L., Seth, R., Hibma, M., Jenkins, D., Lambert, P., Coleman, N., and Doorbar, J. Organization of Human Papillomavirus Productive Cycle during Neoplastic Progression Provides a Basis for Selection of Diagnostic Markers. J. Virol., 77: 10186-10201, 2003.

Miller, D. J., Schwartz, M. D., Dye, B. T., and Ahlquist, P. Engineered Retargeting of Viral RNA Replication Complexes to an Alternative Intracellular Membrane. J. Virol., 77: 12193-12202, 2003.

Morgan-Meadows, S., Dubey, S., Gould, M., Tutsch, K., Marnocha, R., Arzoomanin, R., Alberti, D., Binger, K., Feierabend, C., Volkman, J., Ellingen, S., Black, S., Pomplun, M., Wilding, G., and Bailey, H. Phase I Trial of Perillyl Alcohol Administered Four Times Daily Continuously. Cancer Chemother. Pharmacol., 52: 361-366, 2003.

Narayan, S., Barnard, R. J. O., and Young, J. A. T. Two Retroviral Entry Pathways Distinguished by Lipid Raft Association of the Viral Receptor and Differences in Viral Infectivity. J. Virol., 77: 1977-1983, 2003.

Nguyen, M. L., Nguyen, M. M., Lee, D., Griep, A. E., and Lambert, P. F. The PDZ Ligand Domain of the Human Papillomavirus Type 16 E6 Protein Is Required for E6's Induction of Epithelial Hyperplasia In Vivo. J. Virol., 77: 6957-6964, 2003.

Nguyen, M. M., Nguyen, M. L., Caruana, G., Bernstein, A., Lambert, P. F., and Griep, A. E. Requirement of PDZ-Containing Proteins for Cell Cycle Regulation and Differentiation in the Mouse Lens Epithelium. Mol. Cell. Biol., 23: 8970-8981, 2003.

Noueiry, A. O., and Ahlquist, P. Brome Mosaic Virus RNA Replication: Revealing the Role of the Host in RNA Virus Replication. Annu. Rev. Phytopathol., 41: 77-98, 2003.

Noueiry, A. O., Diez, J., Falk, S. P., Chen, J., and Ahlquist, P. Yeast Lsm1p-7p/Pat1p Deadenylation-Dependent mRNA-Decapping Factors Are Required for Brome Mosaic Virus Genomic RNA Translation. Mol. Cell. Biol., 23: 4094-4106, 2003.

Oberley, M. J., and Farnham, P. J. Probing Chromatin Immunoprecipitates with CpG-Island Microarrays to Identify Genomic Sites Occupied by DNA-Binding Proteins. Methods Enzymol., 371: 577-596, 2003.

Oberley, M. J., Inman, D. R., and Farnham, P. J. E2F6 Negatively Regulates BRCA1 in Human Cancer Cells without Methylation of Histone H3 on Lysine 9. J. Biol. Chem., 278: 42466-42476, 2003.

Ou, Y. C., Conolly, R. B., Thomas, R. S., Gustafson, D. L., Long, M. E., Dobrev, I. D., Chubb, L. S., Xu, Y., Lapidot, S. A., Andersen, M. E., and Yang, R. S. H. Stochastic Simulation of Hepatic Preneoplastic Foci Development for Four Chlorobenzene Congeners in a Medium-Term Bioassay. Toxicol. Sci., 73: 301-314, 2003.

Riley, R. R., Duensing, S., Brake, T., Münger, K., Lambert, P. F., and Arbeit, J. M. Dissection of Human Papillomavirus E6 and E7 Function in Transgenic Mouse Models of Cervical Carcinogenesis. Cancer Res., 63: 4862-4871, 2003.

Roberts, R. J., Belfort, M., Bestor, T., Bhagwat, A. S., Bickle, T. A., Bitinaite, J., Blumenthal, R. M., Degtyarev, S. Kh., Dryden, D. T. F., Dybvig, K., Firman, K., Gromova, E. S., Gumport, R. I., Halford, S. E., Hattman, S., Heitman, J., Hornby, D. P., Janulaitis, A., Jeltsch, A., Josephsen, J., Kiss, A., Klaenhammer, T. R., Kobayashi, I., Kong, H., Kruger, D. H., Lacks, S., Marinus, M. G., Miyahara, M., Morgan, R. D., Murray, N. E., Nagaraja, V., Piekarowicz, A., Pingoud, A., Raleigh, E., Rao, D. N., Reich, N., Repin, V. E., Selker, E. U., Shaw, P. C., Stein, D. C., Stoddard, B. L., Szybalski, W., Trautner, T. A., Van Etten, J. L., Vitor, J. M., Wilson, G. G., and Xu, S. Y. A Nomenclature for Restriction Enzymes, DNA Methyltransferases, Homing Endonucleases and Their Genes. Nucleic Acids Res., 31: 1805-1812, 2003.

Samuelson, D. J., Haag, J. D., Lan, H., Monson, D. M., Shultz, M. A., Kolman, B. D., and Gould, M. N. Physical Evidence of Mcs5, a QTL Controlling Mammary Carcinoma Susceptibility, in Congenic Rats. Carcinogenesis, 24: 1455-1460, 2003.

Scobie, H. M., Rainey, G. J. A., Bradley, K. A., and Young, J. A. T. Human Capillary Morphogenesis Protein 2 Functions as an Anthrax Toxin Receptor. Proc. Natl. Acad. Sci. USA, 100: 5170-5174, 2003.

Szybalski, W. Recollections of 1939-1949: From Politechnika Lwowska to Politechnika Gdańska. Acta Biochim. Pol., 50: XVII-XXI, 2003.

Thompson, N. E., Arthur, T. M., and Burgess, R. R. Development of an Epitope Tag for the Gentle Purification of Proteins by Immunoaffinity Chromatography: Application to Epitope-Tagged Green Fluorescent Protein. Anal. Biochem., 323: 171-179, 2003.

Tomita, Y., Mizuno, T., Díez, J., Naito, S., Ahlquist, P., and Ishikawa, M. Mutation of Host dnaJ Homolog Inhibits Brome Mosaic Virus Negative-Strand RNA Synthesis. J. Virol., 77: 2990-2997, 2003.

Wells, J., Yan, P. S., Cechvala, M., Huang, T., and Farnham, P. J. Identification of Novel pRb Binding Sites using CpG Microarrays Suggests that E2F Recruits pRb to Specific Genomic Sites during S Phase. Oncogene, 22: 1445-1460, 2003.

Wiseman, B. S., Sternlicht, M. D., Lund, L. R., Alexander, C. M., Mott, J., Bissell, M. J., Soloway, P., Itohara, S., and Werb, Z. Site-Specific Inductive and Inhibitory Activities of MMP-2 and MMP-3 Orchestrate Mammary Gland Branching Morphogenesis. J. Cell Biol., 162: 1123-1133, 2003.

Xu, Y.-H., and Pitot, H. C. An Improved Stereologic Method for Three-Dimensional Estimation of Particle Size Distribution from Observations in Two Dimensions and Its Application. Computer Methods Programs Biomed., 72: 1-20, 2003.

Yamada, T., Komoto, J., Takata, Y., Ogawa, H., Pitot, H. C., and Takusagawa, F. Crystal Structure of Serine Dehydratase from Rat Liver. Biochemistry, 42: 12854-12865, 2003.

Yao, G., Harstad, E. B., and Bradfield, C. A. The Ah Receptor. In: S. T. Crews (Ed.), PAS Proteins: Regulators and Sensors of Development and Physiology, Chapter 7, pp. 149-182. Boston: Kluwer Academic Publishers, 2003. http://www.springer.com/life+sci/biochemistry+and+biophysics/book/978-1-4020-7586-5

Yu, X., and Mertz, J. E. Distinct Modes of Regulation of Transcription of Hepatitis B Virus by the Nuclear Receptors HNF4a and COUP-TF1. J. Virol., 77: 2489-2499, 2003.

Yu, X., Wang, Q.-Y., Guo, Y., Dolmer, K., Young, J. A. T., Gettins, P. G. W., and Rong, L. Kinetic Analysis of Binding Interaction between the Subgroup A Rous Sarcoma Virus Glycoprotein SU and Its Cognate Receptor Tva: Calcium Is Not Required for Ligand Binding. J. Virol., 77: 7517-7526, 2003.

Zan, Y., Haag, J. D., Chen, K.-S., Shepel, L. A., Wigington, D., Wang, Y.-R., Hu, R., Lopez-Guajardo, C. C., Brose, H. L., Porter, K. I., Leonard, R. A., Hitt, A. A., Schommer, S. L., Elegbede, A. F., and Gould, M. N. Production of Knockout Rats using ENU Mutagenesis and a Yeast-based Screening Assay. Nat. Biotechnol., 21: 645-651, 2003.

Zhang, H., Gruenke, L., Arscott, D., Shen, A., Kasper, C., Harris, D. L., Glavanovich, M., Johnson, R., and Waskell, L. Determination of the Rate of Reduction of Oxyferrous Cytochrome P450 2B4 by 5-Deazariboflavin Adenine Dinucleotide T491V Cytochrome P450 Reductase. Biochemistry, 42: 11594-11603, 2003.

Zhang, H., Gruenke, L., Saribas, A. S., Im, S.-C., Shen, A. L., Kasper, C. B., and Waskell, L. Preparation and Characterization of a 5'-DeazaFAD T491V NADPH-Cytochrome P450 Reductase. Biochemistry, 42: 6804-6813, 2003.