2006 McArdle Publications

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Abraham, T. M., and Loeb, D. D.  Base Pairing between the 5’ Half of e and a cis-Acting Sequence, F, Makes a Contribution to the Synthesis of Minus-Strand DNA for Human Hepatitis B Virus.  J. Virol., 80:  4380-4387, 2006.

Ahlquist, P. Parallels Among Positive-Strand RNA Viruses, Reverse-Transcribing Viruses and Double-Stranded RNA Viruses. Nat. Rev. Microbiol., 4: 371-382, 2006.

Ahmed, A., Peters, N. R., Fitzgerald, M. K., Watson, J. A. Jr., Hoffmann, F. M., and Thorson, J. S.  Colchicine Glycorandomization Influences Cytotoxicity and Mechanism of Action.  J. Am. Chem. Soc., 128:  14224-14225, 2006.

Altmann, M., Pich, D., Ruiss, R., Wang, J., Sugden, B., and Hammerschmidt, W.  Transcriptional Activation by EBV Nuclear Antigen 1 Is Essential for the Expression of EBV’s Transforming Genes.  Proc. Natl. Acad. Sci. USA, 103:  14188-14193, 2006.

Balsitis, S., Dick, F., Dyson, N., and Lambert, P. F.  Critical Roles for Non-pRb Targets of Human Papillomavirus Type 16 E7 in Cervical Carcinogenesis.  Cancer Res., 66:  9393-9400, 2006.

Boehme, K. W., Guerrero, M., and Compton, T.  Human Cytomegalovirus Envelope Glycoproteins B and H Are Necessary for TLR2 Activation in Permissive Cells.  J. Immunol., 177:  7094-7102, 2006.

Cotroneo, M. S., Merry, G. M., Haag, J. D., Lan, H., Shepel, L. A., and Gould, M. N.  The Mcs7 Quantitative Trait Locus Is Associated with an Increased Susceptibility to Mammary Cancer in Congenic Rats and an Allele-Specific Imbalance.  Oncogene, 25: 5011-5017, 2006.

Dodd, L. E., Sengupta, S., Chen, I.-H., den Boon, J. A., Cheng, Y.-J., Westra, W., Newton, M. A., Mittl, B. F., McShane, L., Chen, C.-J., Ahlquist, P., and Hildesheim, A.  Genes Involved in DNA Repair and Nitrosamine Metabolism and Those Located on Chromosome 14q32 Are Dysregulated in Nasopharyngeal Carcinoma.  Cancer Epidemiol. Biomarkers Prev., 15:  2216-2225, 2006.

Duellman, S. J., and Burgess, R. R.  Overproduction in Escherichia coli and Purification of Epstein-Barr Virus EBNA-1.  Protein Expr. Purif., 47:  434-440, 2006.

Dunham, E. E., Stevens, E. A., Glover, E., and Bradfield, C. A.  The Aryl Hydrocarbon Receptor Signaling Pathway Is Modified through Interactions with a Kelch Protein.  Mol. Pharmacol., 70:  8-15, 2006.

English, E. P., Chumanov, R. S., Gellman, S. H., and Compton, T. Rational Development of b-Peptide Inhibitors of Human Cytomegalovirus Entry. J. Biol. Chem., 281: 2661-2667, 2006.

Garcia-Ruiz, H., and Ahlquist P.  Inducible Yeast System for Viral RNA Recombination Reveals Requirement for an RNA Replication Signal on Both Parental RNAs.  J. Virol., 80:  8316-8328, 2006.

Habig, J. W., and Loeb, D. D.  Sequence Identity of the Direct Repeats, DR1 and DR2, Contributes to the Discrimination between Primer Translocation and in Situ Priming During Replication of the Duck Hepatitis B Virus.  J. Mol. Biol., 364: 32-43, 2006.

Hammerschmidt, W., and Sugden, B.  Epstein-Barr Virus.  In:  M.L. DePamphilis (Ed.), DNA Replication and Human Disease, Chap. 34, pp. 687-705.  Cold Spring Harbor Laboratory:  Cold Spring Harbor Press, 2006. http://dnareplication.cshl.edu/content/free/contents/contents.html

Harstad, E. B., Guite, C. A., Thomae, T. L., and Bradfield, C. A. Liver Deformation in Ahr-Null Mice: Evidence for Aberrant Hepatic Perfusion in Early Development. Mol. Pharmacol., 69: 1534-1541, 2006.

Holsapple, M. P., Pitot, H. C., Cohen, S. H., Boobis, A. R., Klaunig, J. E., Pastoor, T., Dellarco, V. L., and Dragan, Y. P. Mode of Action in Relevance of Rodent Liver Tumors to Human Cancer Risk. Toxicol. Sci., 89: 51-56, 2006.

Lam, V., Boehme, K. W., Compton, T., and Yin, J. Spatial Patterns of Protein Expression in Focal Infections of Human Cytomegalovirus. Biotechnol. Bioeng., 93: 1029-1039, 2006.

Lamberski, J. A., Thompson, N. E., and Burgess, R. R.  Expression and Purification of a Single-Chain Variable Fragment Antibody Derived from a Polyol-Responsive Monoclonal Antibody.  Protein Expr. Purif., 47:  82-92, 2006.

Lambert, P. F., Balsitis, S. J., Shai, A., Simonson, S. J. S., and Williams, S. M. G.  Transgenic Mouse Models for the In Vivo Analysis of Papillomavirus Oncogene Function.  In:  M. Saveria Campo (Ed.), Papillomavirus Research:  From Natural History to Vaccines and Beyond, pp. 213-228.  Caister Academic Press, 2006.

Lim, S. K., and Hoffmann, F. M.  Smad4 Cooperates with Lymphoid Enhancer-Binding Factor 1/T Cell-Specific Factor to Increase c-myc Expression in the Absence of TGF-b Signaling.  Proc. Natl. Acad. Sci. USA, 103:  18580-18585, 2006.

Lindvall, C., Evans, N. C., Zylstra, C. R., Li, Y., Alexander, C. M., and Williams, B. O.  The Wnt Signaling Receptor Lrp5 Is Required for Mammary Ductal Stem Cell Activity and Wnt1-induced Tumorigenesis.  J. Biol. Chem., 281:  35081-35087, 2006.

Mao, C., Flavin, K. G., Wang, S., Dodson, R., Ross, J., and Shapiro, D. J.  Analysis of RNA-Protein Interactions by a Microplate-Based Fluorescence Anisotropy Assay.  Anal. Biochem., 350:  222-232, 2006.

Mas, A., Alves-Rodrigues, I., Noueiry, A., Ahlquist, P., and Díez, J. Host Deadenylation-Dependent mRNA Decapping Factors Are Required for a Key Step in Brome Mosaic Virus RNA Replication. J. Virol., 80: 246-251, 2006.

McDearmon, E. L., Patel, K. N., Ko, C. H., Walisser, J. A., Schook, A. C., Chong, J. L., Wilsbacher, L. D., Song, E. J., Hong, H.-K., Bradfield, C. A., and Takahashi, J. S.  Dissecting the Functions of the Mammalian Clock Protein BMAL1 by Tissue-Specific Rescue in Mice.  Science, 314:  1304-1308, 2006.

Newton, M. A., Clipson, L., Thliveris, A. T., and Halberg, R. B.  A Statistical Test of the Hypothesis that Polyclonal Intestinal Tumors Arise by Random Collision of Initiated Clones.  Biometrics, 62:  721-727, 2006.

Noubissi, F. K., Elcheva, I., Bhatia, N., Shakoori, A., Ougolkov, A., Liu, J., Minamoto, T., Ross, J., Fuchs, S. Y., and Spiegelman, V. S.  CRD-BP Mediates Stabilization of bTrCP1 and c-myc mRNA in Response to b-Catenin Signalling.  Nature, 441:  898-901, 2006.

Ogawa, H., Gomi, T., Nishizawa, M., Hayakawa, Y., Endo, S., Hayashi, K., Ochiai, H., Takusagawa, F., Pitot, H. C., Mori, H., Sakurai, H., Koizumi, K., Saiki, I., Oda, H., Fujishita, T., Miwa, T., Maruyama, M., and Kobayashi, M.  Enzymatic and Biochemical Properties of a Novel Human Serine Dehydratase Isoform.  Biochim. Biophys. Acta, 1764:  961-971, 2006.

Paguirigan, A., Beebe, D. J., Liu, B., and Alexander, C.  Mammary Stem and Progenitor Cells:  Tumour Precursors?  Eur. J. Cancer, 42:  1225-1236, 2006.

Perry, S. T., and Compton, T.  Kaposi’s Sarcoma-Associated Herpesvirus Virions Inhibit Interferon Responses Induced by Envelope Glycoprotein gpK8.1.  J. Virol., 80:  11105-11114, 2006.

Sabree, Z. L., Bergendahl, V., Liles, M. R., Burgess, R. R., Goodman, R. M., and Handelsman, J.  Identification and Characterization of the Gene Encoding the Acidobacterium capsulatum Major Sigma Factor.  Gene, 376:  144-151, 2006.

Saffert, R. T., and Kalejta, R. F. Inactivating a Cellular Intrinsic Immune Defense Mediated by Daxx Is the Mechanism through Which the Human Cytomegalovirus pp71 Protein Stimulates Viral Immediate-Early Gene Expression. J. Virol., 80: 3863-3871, 2006.

Sengupta, S., den Boon, J. A., Chen, I.-H., Newton, M. A., Dahl, D. B., Chen, M., Cheng, Y.-J., Westra, W. H., Chen, C.-J., Hildesheim, A., Sugden, B., and Ahlquist, P.  Genome-Wide Expression Profiling Reveals EBV-Associated Inhibition of MHC Class I Expression in Nasopharyngeal Carcinoma.  Cancer Res., 66:  7999-8006, 2006.

Strati, K., Pitot, H. C., and Lambert, P. F.  Identification of Biomarkers That Distinguish Human Papillomavirus (HPV)-Positive Versus HPV-Negative Head and Neck Cancers in a Mouse Model.  Proc. Natl. Acad. Sci. USA, 103:  14152-14157, 2006.

Sugden, B.  Virology: Micro Mystery Solution.  Nature, 442:  33-34, 2006.

Thomae, T. L., Stevens, E. A., Liss, A. L., Drinkwater, N. R., and Bradfield, C. A. The Teratogenic Sensitivity to 2,3,7,8-Tetrachlorodibenzo-p-dioxin Is Modified by a Locus on Mouse Chromosome 3. Mol. Pharmacol., 69: 770-775, 2006.

Thompson, N. E., Jensen, D. B., Lamberski, J. A., and Burgess, R. R. Purification of Protein Complexes by Immunoaffinity Chromatography: Application to Transcription Machinery. Genet. Eng., 27: 81-100, 2006.

Walisser, J. A., and Bradfield, C. A.  A Time to Divide:  Does the Circadian Clock Control Cell Cycle?  Dev. Cell, 10:  539-540, 2006.

Wang, J., Lindner, S. E., Leight, E. R., and Sugden, B. Essential Elements of a Licensed, Mammalian Plasmid Origin of DNA Synthesis. Mol. Cell. Biol., 26: 1124-1134, 2006.

Wilkins, A. S., and Dove, W. F.  Human Biology:  An Ever-Expanding Subject.  BioEssays, 28:  1146-1149, 2006.

Woditschka, S., Haag, J. D., Waller, J. L., Monson, D. M., Hitt, A. A., Brose, H. L., Hu, R., Zheng, Y., Watson, P. A., Kim, K., Lindstrom, M. J., Mau, B., Steele, V. E., Lubet, R. A., and Gould, M. N.  Neu-Induced Retroviral Rat Mammary Carcinogenesis:  A Novel Chemoprevention Model for Both Hormonally Responsive and Nonresponsive Mammary Carcinomas.  Cancer Res., 66:  6884-6891, 2006.

Xu, Y., and Pitot, H. C. A Software Package to Improve Image Quality and Isolation of Objects of Interest for Quantitative Stereology Studies of Rat Hepatocarcinogenesis. Comput. Methods Programs Biomed., 81: 236-245, 2006.

Yao, T., Song, L., Xu, W., DeMartino, G. N., Florens, L., Swanson, S. K., Washburn, M. P., Conaway, R. C., Conaway, J. W., and Cohen, R. E.  Proteasome Recruitment and Activation of the Uch37 Deubiquitinating Enzyme by Adrm1.  Nat. Cell Biol., 8:  994-1002, 2006.

Zhao, B. M., and Hoffmann, F. M.  Inhibition of Transforming Growth Factor-b1-induced Signaling and Epithelial-to-Mesenchymal Transition by the Smad-binding Peptide Aptamer Trx-SARA.  Mol. Biol. Cell, 17:  3819-3831, 2006.