2007 McArdle Publications

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Abraham, T. M., and Loeb, D. D.  The Topology of Hepatitis B Virus Pregenomic RNA Promotes Its Replication.  J. Virol., 81:  11577-11584, 2007.

Amos-Landgraf, J. M., Kwong, L. N., Kendziorski, C. M., Reichelderfer, M., Torrealba, J., Weichert, J., Haag, J. D., Chen, K.-S., Waller, J. L., Gould, M. N., and Dove, W. F.  A Target-Selected Apc-Mutant Rat Kindred Enhances the Modeling of Familial Human Colon Cancer.  Proc. Natl. Acad. Sci. USA, 104:  4036-4041, 2007.

Ariazi, E. A., Kraus, R. J., Farrell, M. L., Jordan, V. C., and Mertz, J. E.  Estrogen-Related Receptor a1 Transcriptional Activities Are Regulated in Part via the ErbB2/HER2 Signaling Pathway.  Mol. Cancer Res., 5:  71-85, 2007.

Babel, A. R., Bruce, J., and Young, J. A. T.  The hr1 and Fusion Peptide Regions of the Subgroup B Avian Sarcoma and Leukosis Virus Envelope Glycoprotein Influence Low pH-Dependent Membrane Fusion.  PLoS ONE, 2:e171, 2007.

Beckham, C. J., Light, H. R., Nissan, T. A., Ahlquist, P., Parker, R., and Noueiry, A.  Interactions between Brome Mosaic Virus RNAs and Cytoplasmic Processing Bodies.  J. Virol., 81:  9759-9768, 2007.

Bhende, P. M., Dickerson, S. J., Sun, X., Feng, W.-H., and Kenney, S. C.  X-Box-Binding Protein 1 Activates Lytic Epstein-Barr Virus Gene Expression in Combination with Protein Kinase D.  J. Virol., 81:  7363-7370, 2007.

Chen, S., Zheng, T., Shortreed, M. R., Alexander, C., and Smith, L. M.  Analysis of Cell Surface Carbohydrate Expression Patterns in Normal and Tumorigenic Human Breast Cell Lines Using Lectin Arrays.  Anal. Chem., 79:  5698-5702, 2007.

Cotroneo, M. S., Haag, J. D., Zan, Y., Lopez, C. C., Thuwajit, P., Petukhova, G. V., Camerini-Otero, R. D., Gendron-Fitzpatrick, A., Griep, A. E., Murphy, C. J., Dubielzig, R. R., and Gould, M. N.  Characterizing a Rat Brca2 Knockout Model.  Oncogene, 26: 1626-1635, 2007.

Czarny, M. J., Babcock, K., Baus, R. M., Manoharan, H., and Pitot, H. C.  Hepatocellular Carcinomas of the Albumin SV40 T-Antigen Transgenic Rat Display Fetal-Like Re-Expression of Igf2 and Deregulation of H19.  Mol. Carcinog., 46:  747-757, 2007.

Drew, J. C., Kastenmeier, A. S., and Drinkwater, N. R.  Ancestral Bias in the Hras1 Gene and Distal Chromosome 7 Among Inbred Mice.  Mamm. Genome, 18:  732-738, 2007.

Feng, W.-h., Kraus, R. J., Dickerson, S. J., Lim, H. J., Jones, R. J., Yu, X., Mertz, J. E., and Kenney, S. C.  ZEB1 and c-Jun Levels Contribute to the Establishment of Highly Lytic Epstein-Barr Virus Infection in Gastric AGS Cells.  J. Virol., 81:  10113-10122, 2007.

Fowler, A. M., and Alarid, E. T.  Amping Up Estrogen Receptors in Breast Cancer.  Breast Cancer Res., 9:305, 2007.

Glaser, B. T., Bergendahl, V., Thompson, N. E., Olson, B., and Burgess, R. R. LRET-Based HTS of a Small-Compound Library for Inhibitors of Bacterial RNA Polymerase.  Assay Drug Dev. Technol., 5:  759-768, 2007.

Haines, K. M., and Loeb, D. D.  The Sequence of the RNA Primer and the DNA Template Influence the Initiation of Plus-strand DNA Synthesis in Hepatitis B Virus.  J. Mol. Biol., 370:  471-480, 2007.

Halberg, R. B., and Dove, W. F.  Polyclonal Tumors in the Mammalian Intestine:  Are Interactions Among Multiple Initiated Clones Necessary for Tumor Initiation, Growth, and Progression?  Cell Cycle, 6:  44-51, 2007.

Hayes, K. R., Zastrow, G. M., Nukaya, M., Pande, K., Glover, E., Maufort, J. P., Liss, A. L., Liu, Y., Moran, S. M., Vollrath, A. L., and Bradfield, C. A.  Hepatic Transcriptional Networks Induced by Exposure to 2,3,7,8-Tetrachlorodibenzo-p-dioxin.  Chem. Res. Toxicol., 20:  1573-1581, 2007.

Higashimoto, K., Kuhn, P., Desai, D., Cheng, X., and Xu, W.  Phosphorylation-Mediated Inactivation of Coactivator-Associated Arginine Methyltransferase 1.  Proc. Natl. Acad. Sci. USA, 104:  12318-12323, 2007.

Hwang, J., and Kalejta, R. F.  Proteasome-Dependent, Ubiquitin-Independent Degradation of Daxx by the Viral pp71 Protein in Human Cytomegalovirus-Infected Cells.  Virology, 367:  334-338, 2007.

Isaacson, M. K., Feire, A. L., and Compton, T.  Epidermal Growth Factor Receptor Is Not Required for Human Cytomegalovirus Entry or Signaling.  J. Virol., 81:  6241-6247, 2007.

Jiang, X., Ellison, S. J., Alarid, E. T., and Shapiro, D. J.  Interplay between the Levels of Estrogen and Estrogen Receptor Controls the Level of the Granzyme Inhibitor, Proteinase Inhibitor 9 and Susceptibility to Immune Surveillance by Natural Killer Cells.  Oncogene, 26:  4106-4114, 2007.

Jones, R. J., Dickerson, S., Bhende, P. M., Delecluse, H.-J., and Kenney, S. C. Epstein-Barr Virus Lytic Infection Induces Retinoic Acid-responsive Genes through Induction of a Retinol-metabolizing Enzyme, DHRS9.  J. Biol. Chem., 282: 8317-8324, 2007.

Jones, R. J., Seaman, W. T., Feng, W.-H., Barlow, E., Dickerson, S., Delecluse, H.-J., and Kenney, S. C.  Roles of Lytic Viral Infection and IL-6 in Early Versus Late Passage Lymphoblastoid Cell Lines and EBV-Associated Lymphoproliferative Disease.  Int. J. Cancer, 121:  1274-1281, 2007.

Kaiser, S., Park, Y.-K., Franklin, J. L., Halberg, R. B., Yu, M., Jessen, W. J., Freudenberg, J., Chen, X., Haigis, K., Jegga, A. G., Kong, S., Sakthivel, B., Xu, H., Reichling, T., Azhar, M., Boivin, G. P., Roberts, R. B., Bissahoyo, A. C., Gonzales, F., Bloom, G. C., Eschrich, S., Carter, S. L., Aronow, J. E., Kleimeyer, J., Kleimeyer, M., Ramaswamy, V., Settle, S. H., Boone, B., Levy, S., Graff, J. M., Doetschman, T., Groden, J., Dove, W. F., Threadgill, D. W., Yeatman, T. J., Coffey, R. J. Jr., and Aronow, B. J.  Transcriptional Recapitulation and Subversion of Embryonic Colon Development by Mouse Colon Tumor Models and Human Colon Cancer.  Genome Biol., 8:R131, 2007.

Kenney, S. C.  Reactivation and Lytic Replication of EBV.  In:  A. Arvin, G. Campadelli-Fiume, E. Mocarski, P. S. Moore, B. Roizman, R. Whitley, and K. Yamanishi (Eds.), Human Herpesviruses:  Biology, Therapy, and Immunoprophylaxis, Chapter 25.  Cambridge:  Cambridge University Press, 2007.

Kopek, B. G., Perkins, G., Miller, D. J., Ellisman, M. H., and Ahlquist, P.  Three-Dimensional Analysis of a Viral RNA Replication Complex Reveals a Virus-Induced Mini-Organelle.  PLoS Biol., 5:e220, 2007.

Kwong, L. N., Shedlovsky, A., Biehl, B. S., Clipson, L., Pasch, C. A., and Dove, W. F.  Identification of Mom7, a Novel Modifier of ApcMin/+  on Mouse Chromosome 18.  Genetics, 176: 1237-1244, 2007.

Lambert, P. F., and Griep, A. E.  In Vivo Models for the Study of Animal and Human Papillomaviruses.  In:  R. Garcea and D. DiMaio (Eds.), The Papillomaviruses, pp. 253-276.  The Netherlands:  Springer Scientific (Kluwer Academic), 2007.

Lee, J., and Sugden, B.  A Membrane Leucine Heptad Contributes to Trafficking, Signaling, and Transformation by Latent Membrane Protein 1.  J. Virol., 81:  9121-9130, 2007.

Lewellyn, E. B., and Loeb, D. D.  Base Pairing Between cis-Acting Sequences Contributes to Template Switching during Plus-Strand DNA Synthesis in Human Hepatitis B Virus.  J. Virol., 81:  6207-6215, 2007.

Lin, B. C., Sullivan, R., Lee, Y., Moran, S., Glover, E., and Bradfield, C. A.  Deletion of the Aryl Hydrocarbon Receptor-associated Protein 9 Leads to Cardiac Malformation and Embryonic Lethality.  J. Biol. Chem., 282:  35924-35932, 2007.

Lindner, S. E., and Sugden, B.  The Plasmid Replicon of Epstein-Barr Virus:  Mechanistic Insights Into Efficient, Licensed, Extrachromosomal Replication in Human Cells.  Plasmid, 58:  1-12, 2007.

Maufort, J. P., Genther Williams, S. M., Pitot, H. C., and Lambert, P. F.  Human Papillomavirus 16 E5 Oncogene Contributes to Two Stages of Skin Carcinogenesis.  Cancer Res., 67:  6106-6112, 2007.

McDermott, S. P., Ranheim, E. A., Leatherberry, V. S., Khwaja, S. S., Klos, K. S., and Alexander, C. M.  Juvenile Syndecan-1 Null Mice Are Protected from Carcinogen-Induced Tumor Development.  Oncogene, 26: 1407-1416, 2007.

McMillan, B. J., and Bradfield, C. A.  The Aryl Hydrocarbon Receptor Is Activated by Modified Low-Density Lipoprotein.  Proc. Natl. Acad. Sci. USA, 104:  1412-1417, 2007.

McMillan, B. J., and Bradfield, C. A.  The Aryl Hydrocarbon Receptor sans Xenobiotics:  Endogenous Function in Genetic Model Systems.  Mol. Pharmacol., 72:  487-498, 2007.

McMillan, B. J., McMillan, S. N., Glover, E., and Bradfield, C. A.  2,3,7,8-Tetrachlorodibenzo-p-dioxin Induces Premature Activation of the KLF2 Regulon during Thymocyte Development.  J. Biol. Chem., 282:  12590-12597, 2007.

Megid, W. A., Ensenberger, M. G., Halberg, R. B., Stanhope, S. A., Kent-First, M. G., Prolla, T. A., and Bacher, J. W.  A Novel Method for Biodosimetry.  Radiat. Environ. Biophys., 46:  147-154, 2007.

Moorthy, J., Burgess, R., Yethiraj, A., and Beebe, D.  Microfluidic Based Platform for Characterization of Protein Interactions in Hydrogel Nanoenvironments.  Anal. Chem., 79:  5322-5327, 2007.

Nakahara, T., and Lambert, P. F.  Induction of Promyelocytic Leukemia (PML) Oncogenic Domains (PODs) by Papillomavirus.  Virology, 366:  316-329, 2007.

Nanbo, A., Sugden, A., and Sugden, B.  The Coupling of Synthesis and Partitioning of EBV’s Plasmid Replicon Is Revealed in Live Cells.  EMBO J., 26:  4252-4262, 2007.

Newton, M. A., Quintana, F. A., den Boon, J. A., Sengupta, S., and Ahlquist, P.  Random-Set Methods Identify Distinct Aspects of the Enrichment Signal in Gene-Set Analysis.  Ann. Appl. Stat., 1:  85-106, 2007. Journal link to article

Paguirigan, A., Beebe, D. J., and Alexander, C. M.  Simulating Mouse Mammary Gland Development:  Cell Ageing and Its Relation to Stem and Progenitor Activity.  Cell Prolif., 40:  106-124, 2007.

Pi, J., Bai, Y., Reece, J. M., Williams, J., Liu, D., Freeman, M. L., Fahl, W. E., Shugar, D., Liu, J., Qu, W., Collins, S., and Waalkes, M. P.  Molecular Mechanism of Human Nrf2 Activation and Degradation:  Role of Sequential Phosphorylation by Protein Kinase CK2.  Free Radic. Biol. Med., 42:  1797-1806, 2007.

Pitot, H. C.  Adventures in Hepatocarcinogenesis.  Annu. Rev. Pathol. Mech. Dis., 2:  1-29, 2007.

Pitot, H. C.  On Being a Pathologist.  Hum. Pathol., 38: 824-829, 2007.

Powell, E., Kuhn, P., and Xu, W.  Nuclear Receptor Cofactors in PPARg-mediated Adipogenesis and Adipocyte Energy Metabolism.  PPAR Res., 2007:53843, 11 pages, 2007.

Probasco, M. D., Thompson, N. E., and Burgess, R. R.  Immunoaffinity Purification and Characterization of RNA Polymerase from Shewanella oneidensis.  Protein Expr. Purif., 55:  23-30, 2007.

Pyeon, D., Newton, M. A., Lambert, P. F., den Boon, J. A., Sengupta, S., Marsit, C. J., Woodworth, C. D., Connor, J. P., Haugen, T. H., Smith, E. M., Kelsey, K. T., Turek, L. P., and Ahlquist, P.  Fundamental Differences in Cell Cycle Deregulation in Human Papillomavirus-Positive and Human Papillomavirus-Negative Head/Neck and Cervical Cancers.  Cancer Res., 67:  4605-4619, 2007.

Rose-Hellekant, T. A., Schroeder, M. D., Brockman, J. L., Zhdankin, O., Bolstad, R., Chen, K. S., Gould, M. N., Schuler, L. A., and Sandgren, E. P.  Estrogen Receptor-Positive Mammary Tumorigenesis in TGFa Transgenic Mice Progresses with Progesterone Receptor Loss.  Oncogene, 26:  5238-5246, 2007.

Saffert, R. T., and Kalejta, R. F.  Human Cytomegalovirus Gene Expression Is Silenced by Daxx-Mediated Intrinsic Immune Defense in Model Latent Infections Established In Vitro.  J. Virol., 81:  9109-9120, 2007.

Samuelson, D. J., Hesselson, S. E., Aperavich, B. A., Zan, Y., Haag, J. D., Trentham-Dietz, A., Hampton, J. M., Mau, B., Chen, K.-S., Baynes, C., Khaw, K.-T., Luben, R., Perkins, B., Shah, M., Pharoah, P. D., Dunning, A. M., Easton, D. F., Ponder, B. A., and Gould, M. N.  Rat Mcs5a Is a Compound Quantitative Trait Locus with Orthologous Human Loci That Associate with Breast Cancer Risk.  Proc. Natl. Acad. Sci. USA, 104:  6299-6304, 2007.

Shai, A., Brake, T., Somoza, C., and Lambert, P. F.  The Human Papillomavirus E6 Oncogene Dysregulates the Cell Cycle and Contributes to Cervical Carcinogenesis through Two Independent Activities.  Cancer Res., 67:  1626-1635, 2007.  Erratum in:  Cancer Res., 67:  3492, 2007.

Shai, A., Nguyen, M. L., Wagstaff, J., Jiang, Y.-h., and Lambert, P. F.  HPV16 E6 Confers p53-Dependent and p53-Independent Phenotypes in the Epidermis of Mice Deficient for E6AP.  Oncogene, 26: 3321-3328, 2007.

Slavik, M. A., Allen-Hoffmann, B. L., Liu, B. Y., and Alexander, C. M.  Wnt Signaling Induces Differentiation of Progenitor Cells in Organotypic Keratinocyte Cultures.  BMC Dev. Biol., 7:9, 2007.

Smits, B. M. G., Cotroneo, M. S., Haag, J. D., and Gould, M. N.  Genetically Engineered Rat Models for Breast Cancer.  Breast Dis., 28:  53-61, 2007.

Spardy, N., Duensing, A., Charles, D., Haines, N., Nakahara, T., Lambert, P. F., and Duensing, S.  The Human Papillomavirus Type 16 E7 Oncoprotein Activates the Fanconi Anemia (FA) Pathway and Causes Accelerated Chromosomal Instability in FA Cells.  J. Virol., 81:  13265-13270, 2007.

Strati, K., and Lambert, P. F.  Role of Rb-Dependent and Rb-Independent Functions of Papillomavirus E7 Oncogene in Head and Neck Cancer.  Cancer Res., 67:  11585-11593, 2007.

Trubetskoy, O. V., Finel, M., Kurkela, M., Fitzgerald, M., Peters, N. R., Hoffmann, F. M., and Trubetskoy, V. S.  High Throughput Screening Assay for UDP-Glucuronosyltransferase 1A1 Glucuronidation Profiling.  Assay Drug Dev. Technol., 5:  343-354, 2007.

Van Wynsberghe, P. M., Chen, H.-R., and Ahlquist, P.  Nodavirus RNA Replication Protein A Induces Membrane Association of Genomic RNA.  J. Virol., 81:  4633-4644, 2007.

Vu, E. H., Kraus, R. J., and Mertz, J. E.  Phosphorylation-Dependent Sumoylation of Estrogen-Related Receptor a1.  Biochemistry, 46:  9795-9804, 2007.

Watanabe, T., Sorensen, E. M., Naito, A., Schott, M., Kim, S., and Ahlquist, P.  Involvement of Host Cellular Multivesicular Body Functions in Hepatitis B Virus Budding.  Proc. Natl. Acad. Sci. USA, 104:  10205-10210, 2007.

Weinberg, A. L., Carter, D., Ahonen, M., Alarid, E. T., Murdoch, F. E., and Fritsch, M. K.  The DNA Binding Domain of Estrogen Receptor a Is Required for High-Affinity Nuclear Interaction Induced by Estradiol.  Biochemistry, 46:  8933-8942, 2007.

Xu, Y.-H., Manoharan, H. T., and Pitot, H. C.  CpG PatternFinder:  a Windows®-Based Utility Program for Easy and Rapid Identification of the CpG Methylation Status of DNA.  BioTechniques, 43:  334-342, 2007.

Yang, B., O’Herrin, S. M., Wu, J., Reagan-Shaw, S., Ma, Y., Bhat, K. M. R., Gravekamp, C., Setaluri, V., Peters, N., Hoffmann, F. M., Peng, H., Ivanov, A. V., Simpson, A. J. G., and Longley, B. J.  MAGE-A, mMage-b, and MAGE-C Proteins Form Complexes with KAP1 and Suppress p53-Dependent Apoptosis in MAGE-Positive Cell Lines.  Cancer Res., 67:  9954-9962, 2007.

Yu, F., Feng, J., Harada, J. N., Chanda, S. K., Kenney, S. C., and Sun, R.  B Cell Terminal Differentiation Factor XBP-1 Induces Reactivation of Kaposi’s Sarcoma-Associated Herpesvirus.  FEBS Lett., 581:  3485-3488, 2007.

Yu, H., Alexander, C. M., and Beebe, D. J.  A Plate Reader-Compatible Microchannel Array for Cell Biology Assays.  Lab Chip, 7:  388-391, 2007.

Yu, H., Alexander, C. M., and Beebe, D. J.  Understanding Microchannel Culture:  Parameters Involved in Soluble Factor Signaling.  Lab Chip, 7:  726-730, 2007.

Yu, X., Wang, Z., and Mertz, J. E.  ZEB1 Regulates the Latent-Lytic Switch in Infection by Epstein-Barr Virus.  PLoS Pathog., 3:e194, 2007.

Zhao, K., Liu, M., and Burgess, R. R.  Adaptation in Bacterial Flagellar and Motility Systems:  From Regulon Members to ‘Foraging’-Like Behavior in E. coli.  Nucleic Acids Res., 35:  4441-4452, 2007.

Zheng, T., Yu, H., Alexander, C. M., Beebe, D. J., and Smith, L. M.  Lectin-Modified Microchannels for Mammalian Cell Capture and Purification.  Biomed. Microdevices, 9:  611-617, 2007.