2008 McArdle Publications

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Abraham, T. M., Lewellyn, E. B., Haines, K. M., and Loeb, D. D.  Characterization of the Contribution of Spliced RNAs of Hepatitis B Virus to DNA Synthesis in Transfected Cultures of Huh7 and HepG2 Cells.  Virology, 379:  30-37, 2008.

Aitman, T. J., Critser, J. K., Cuppen, E., Dominiczak, A., Fernandez-Suarez, X.M., Flint, J., Gauguier, D., Geurts, A. M., Gould, M., Harris, P. C., Holmdahl, R., Hubner, N., Izsvák, Z., Jacob, H. J., Kuramoto, T., Kwitek, A. E., Marrone, A., Mashimo, T., Moreno, C., Mullins, J., Mullins, L., Olsson, T., Pravenec, M., Riley, L., Saar, K., Serikawa, T., Shull, J. D., Szpirer, C., Twigger, S. N., Voigt, B., and Worley, K.  Progress and Prospects in Rat Genetics:  A Community View.  Nat. Genet., 40:  516-522, 2008.

Alexander, C. M.  Base Behavior behind Budding Breasts:  Integrins and Mammary Stem Cell Activity.  Cell Stem Cell, 3:  5-6, 2008.

Attia, S., Holen, K. D., Thomas, J. P., Richie, K., Dzelak, T., Teeter, K., Warren, D., Bilger, A., Fine, J., Eickhoff, J., Drinkwater, N., Mulkerin, D., and Morgan-Meadows, S.  Biologic Study of the Effects of Octreotide-LAR on Growth Hormone in Unresectable and Metastatic Hepatocellular Carcinoma.  Clin. Adv. Hematol. Oncol., 6:  44-54, 2008.

Badders, N. M., Yu, H., Alexander, C. M., and Beebe, D. J.  Quantification of Small Cell Numbers with a Microchannel Device.  BioTechniques, 45:  321-325, 2008.

Bauer, M., Eickhoff, J. C., Gould, M. N., Mundhenke, C., Maass, N., and Friedl, A.  Neutrophil Gelatinase-Associated Lipocalin (NGAL) Is a Predictor of Poor Prognosis in Human Primary Breast Cancer.  Breast Cancer Res. Treat., 108:  389-397, 2008.

Bilger, A., Sullivan, R., Prunuske, A. J., Clipson, L., Drinkwater, N. R., and Dove, W. F.  Widespread Hyperplasia Induced by Transgenic TGFα in ApcMin Mice Is Associated with Only Regional Effects on Tumorigenesis.  Carcinogenesis, 29:  1825-1830, 2008.

Bruce, J. W., Ahlquist, P., and Young, J. A. T.  The Host Cell Sulfonation Pathway Contributes to Retroviral Infection at a Step Coincident with Provirus Establishment.  PLoS Pathog., 4(11):e1000207, 2008.

Bunger, M. K., Glover, E., Moran, S. M., Walisser, J. A., Lahvis, G. P., Hsu, E. L., and Bradfield, C. A.  Abnormal Liver Development and Resistance to 2,3,7,8-Tetrachlorodibenzo-p-Dioxin Toxicity in Mice Carrying a Mutation in the DNA-Binding Domain of the Aryl Hydrocarbon Receptor.  Toxicol. Sci., 106:  83-92, 2008.

Burgess, R. R.  Protein Purification.  In:  H. G. Nothwang and S. E. Pfeiffer (Eds.), Proteomics of the Nervous System, Chapter 1, pp. 1-18.  Weinheim:  WILEY-VCH Verlag GmbH & Co., 2008. http://www.wiley.com/WileyCDA/WileyTitle/productCd-3527317163,descCd-tableOfContents.html

Chen, X., Ehrhardt, W. M., Halberg, R. B., Aronow, B. J., and Dove, W. F.  Cellular Expression Patterns of Genes Upregulated in Murine and Human Colonic Neoplasms.  J. Histochem. Cytochem., 56: 433-441, 2008.

Chen, X., Halberg, R. B., Burch, R. P., and Dove, W. F.  Intestinal Adenomagenesis Involves Core Molecular Signatures of the Epithelial-Mesenchymal Transition.  J. Mol. Histol., 39: 283-294, 2008.

Chung, S.-H., Wiedmeyer, K., Shai, A., Korach, K. S., and Lambert, P. F.  Requirement for Estrogen Receptor α in a Mouse Model for Human Papillomavirus-Associated Cervical Cancer.  Cancer Res., 68:  9928-9934, 2008.

DeCarlo, C. A., Escott, N. G., Werner, J., Robinson, K., Lambert, P. F., Law, R. D., and Zehbe, I.  Gene Expression Analysis of Interferon κ in Laser Capture Microdissected Cervical Epithelium.  Anal. Biochem., 381:  59-66, 2008.

Decker, N. K., Abdelmoneim, S. S., Yaqoob, U., Hendrickson, H., Hormes, J., Bentley, M., Pitot, H., Urrutia, R., Gores, G. J., and Shah, V. H.  Nitric Oxide Regulates Tumor Cell Cross-Talk with Stromal Cells in the Tumor Microenvironment of the Liver.  Am. J. Pathol., 173:  1002-1012, 2008.

Diaz-Chavez, J., Hernandez-Pando, R., Lambert, P. F., and Gariglio, P.  Down-Regulation of Transforming Growth Factor-β Type II Receptor (TGF-βRII) Protein and mRNA Expression in Cervical Cancer.  Mol. Cancer, 7:3, 2008.

Durkee, B. Y., Mudd, S. R., Roen, C. N., Clipson, L., Newton, M. A., Weichert, J. P., Pickhardt, P. J., and Halberg, R. B.  Reproducibility and Accuracy of Tumor Volume Measurement at MicroCT Colonography in Living Mice.  Acad. Radiol., 15:  334-341, 2008.

Filutowicz, M., Burgess, R., Gamelli, R. L., Heinemann, J. A., Kurenbach, B., Rakowski, S. A., and Shankar, R.  Bacterial Conjugation-Based Antimicrobial Agents.  Plasmid, 60:  38-44, 2008.

Halberg, R. B., Campaigne Larsen, M., Elmergreen, T. L., Ko, A. Y., Irving, A. A., Clipson, L., and Jefcoate, C. R.  Cyp1b1 Exerts Opposing Effects on Intestinal Tumorigenesis via Exogenous and Endogenous Substrates.  Cancer Res., 68: 7394-7402, 2008.

Halberg, R. B., Chen, X., Amos-Landgraf, J. M., White, A., Rasmussen, K., Clipson, L., Pasch, C., Sullivan, R., Pitot, H. C., and Dove, W. F.  The Pleiotropic Phenotype of Apc Mutations in the Mouse:  Allele Specificity and Effects of the Genetic Background.  Genetics, 180:  601-609, 2008.

Hao, L., Sakurai, A., Watanabe, T., Sorensen, E., Nidom, C. A., Newton, M. A., Ahlquist, P., and Kawaoka, Y.  Drosophila RNAi Screen Identifies Host Genes Important for Influenza Virus Replication.  Nature, 454:  890-893, 2008.

Hoffmann, F. M., Cui, Q., Lim, S. K., and Zhao, B. M.  Targeting Smad-dependent TGF-β Signaling with Peptide Aptamers.  In:  S. B. Jakowlew (Ed.), Transforming Growth Factor-β in Cancer Therapy, Volume II, Chapter 45.  Totowa, NJ:  Humana Press, 2008. http://www.springer.com/humana+press/oncology/book/978-1-58829-715-0?detailsPage=toc

Hume, A. J., Finkel, J. S., Kamil, J. P., Coen, D. M., Culbertson, M. R., and Kalejta, R. F.  Phosphorylation of Retinoblastoma Protein by Viral Protein with Cyclin-Dependent Kinase Function.  Science, 320:  797-799, 2008. (For news article about this Science paper, go to: http://www.news.wisc.edu/15213)

Ju, J., Rajski, S. R., Lim, S.-K., Seo, J.-W., Peters, N. R., Hoffmann, F. M., and Shen, B.  Evaluation of New Migrastatin and Dorrigocin Congeners Unveils Cell Migration Inhibitors with Dramatically Improved Potency.  Bioorg. Med. Chem. Lett., 18:  5951-5954, 2008.

Juckem, L. K., Boehme, K. W., Feire, A. L., and Compton, T.  Differential Initiation of Innate Immune Responses Induced by Human Cytomegalovirus Entry into Fibroblast Cells.  J. Immunol., 180:  4965-4977, 2008.

Kalantari, M., Lee, D., Calleja-Macias, I. E., Lambert, P. F., and Bernard, H.-U.  Effects of Cellular Differentiation, Chromosomal Integration and 5'-Aza-2'-Deoxycytidine Treatment on Human Papillomavirus-16 DNA Methylation in Cultured Cell Lines.  Virology, 374: 292-303, 2008.

Kalejta, R. F.  Functions of Human Cytomegalovirus Tegument Proteins Prior to Immediate Early Gene Expression.  Curr. Top. Microbiol. Immunol., 325:  101-115, 2008.

Kalejta, R. F.  Tegument Proteins of Human Cytomegalovirus.  Microbiol. Mol. Biol. Rev., 72:  249-265, 2008.

Kim, Y. C., Clark, R. J., Ranheim, E. A., and Alexander, C. M.  Wnt1 Expression Induces Short-Range and Long-Range Cell Recruitments That Modify Mammary Tumor Development and Are Not Induced by a Cell-Autonomous β-Catenin Effector.  Cancer Res., 68:  10145-10153, 2008.

Kunieda, T., Minamino, T., Miura, K., Katsuno, T., Tateno, K., Miyauchi, H., Kaneko, S., Bradfield, C. A., FitzGerald, G. A., and Komuro, I.  Reduced Nitric Oxide Causes Age-Associated Impairment of Circadian Rhythmicity.  Circ. Res., 102: 607-614, 2008.

Kwong, L. N., Weiss, K. R., Haigis, K. M., and Dove, W. F.  Atm Is a Negative Regulator of Intestinal Neoplasia.  Oncogene, 27:  1013-1018, 2008.

Lambert, P. F., and Collins, A.  Papillomaviruses:  Molecular Biology of Human Viruses.  In:  B. W. J. Mahy and M.H.V. van Regenmortel, Editors-in-Chief, Encyclopedia of Virology, Third Edition, pp. 18-26.  Academic Press, Elsevier, 2008.

Lambert, P. F., and Sugden, B.  Viruses and Human Cancer, Chapter 11, pp. 153-169.  In:  M. D. Abeloff, J. O. Armitage, J. E. Niederhuber, M. B. Kastan, and W. G. McKenna (Eds.), Abeloff’s Clinical Oncology, Fourth Edition, 2555 pp.  Philadelphia:  Churchill Livingstone, imprint of Elsevier, 2008.

Lee, D. Y., and Sugden, B.  The Latent Membrane Protein 1 Oncogene Modifies B-Cell Physiology by Regulating Autophagy.  Oncogene, 27: 2833-2842, 2008.

Lee, D. Y., and Sugden, B.  The LMP1 Oncogene of EBV Activates PERK and the Unfolded Protein Response to Drive Its Own Synthesis.  Blood, 111:  2280-2289, 2008.

Lin, B. C., Nguyen, L. P., Walisser, J. A., and Bradfield, C. A.  A Hypomorphic Allele of Aryl Hydrocarbon Receptor-Associated Protein-9 Produces a Phenocopy of the Ahr-Null Mouse.  Mol. Pharmacol., 74:  1367-1371, 2008.

Lindner, S. E., Zeller, K., Schepers, A., and Sugden, B.  The Affinity of EBNA1 for Its Origin of DNA Synthesis Is a Determinant of the Origin’s Replicative Efficiency.  J. Virol., 82:  5693-5702, 2008.

Mack, A. A., and Sugden, B.  EBV Is Necessary for Proliferation of Dually Infected Primary Effusion Lymphoma Cells.  Cancer Res., 68:  6963-6968, 2008.

Massimi, P., Shai, A., Lambert, P., and Banks, L.  HPV E6 Degradation of p53 and PDZ Containing Substrates in an E6AP Null Background.  Oncogene, 27: 1800-1804, 2008.

Mendoza-Villanueva, D., Diaz-Chavez, J., Uribe-Figueroa, L., Rangel-Escareão, C., Hidalgo-Miranda, A., March-Mifsut, S., Jimenez-Sanchez, G., Lambert, P. F., and Gariglio, P.  Gene Expression Profile of Cervical and Skin Tissues from Human Papillomavirus Type 16 E6 Transgenic Mice.  BMC Cancer, 8:347, 2008.

Nguyen, L. P., and Bradfield, C. A.  The Search for Endogenous Activators of the Aryl Hydrocarbon Receptor.  Chem. Res. Toxicol., 21:  102-116, 2008.

Nofsinger, R. R., Li, P., Hong, S.-H., Jonker, J. W., Barish, G. D., Ying, H., Cheng, S.-y., LeBlanc, M., Xu, W., Pei, L., Kang, Y.-J., Nelson, M., Downes, M., Yu, R. T., Olefsky, J. M., Lee, C.-H., and Evans, R. M.  SMRT Repression of Nuclear Receptors Controls the Adipogenic Set Point and Metabolic Homeostasis.  Proc. Natl. Acad. Sci. USA, 105:  20021-20026, 2008.

Powell, E., and Xu, W.  Intermolecular Interactions Identify Ligand-Selective Activity of Estrogen Receptor α/β Dimers.  Proc. Natl. Acad. Sci. USA, 105:  19012-19017, 2008.

Saffert, R. T., and Kalejta, R. F.  Promyelocytic Leukemia-Nuclear Body Proteins:  Herpesvirus Enemies, Accomplices, or Both?  Future Virol., 3: 265-277, 2008.

Sengupta, S., den Boon, J. A., Chen, I.-H., Newton, M. A., Stanhope, S. A., Cheng, Y.-J., Chen, C.-J., Hildesheim, A., Sugden, B., and Ahlquist, P.  MicroRNA 29c Is Down-Regulated in Nasopharyngeal Carcinomas, Up-Regulating mRNAs Encoding Extracellular Matrix Proteins.  Proc. Natl. Acad. Sci. USA, 105:  5874-5878, 2008.

Shai, A., Pitot, H. C., and Lambert, P. F.  p53 Loss Synergizes with Estrogen and Papillomaviral Oncogenes to Induce Cervical and Breast Cancers.  Cancer Res., 68:  2622-2631, 2008.

Smith, A. A., Vollrath, A., Bradfield, C. A., and Craven, M.  Similarity Queries for Temporal Toxicogenomic Expression Profiles.  PLoS Comput. Biol., 4(7):e1000116, 2008.  [Erratum in:  PLoS Comput. Biol., Nov; 4(11) 2008.]

Stevens, E. A., and Bradfield, C. A.  Immunology:  T Cells Hang in the Balance.  Nature, 453:  46-47, 2008.

Strati, K., and Lambert, P. F.  Human  Papillomavirus Association with Head and Neck Cancers:  Understanding Virus Biology and Using It in the Development of Cancer Diagnostics.  Expert Opin. Med. Diagn., 2:  11-20, 2008.

Valley, C. C., Solodin, N. M., Powers, G. L., Ellison, S. J., and Alarid, E. T.  Temporal Variation in Estrogen Receptor-α Protein Turnover in the Presence of Estrogen.  J. Mol. Endocrinol., 40:  23-34, 2008.

Wang, C.-Y., and Sugden, B.  Identifying a Property of Origins of DNA Synthesis Required to Support Plasmids Stably in Human Cells.  Proc. Natl. Acad. Sci. USA, 105:  9639-9644, 2008.

Wang, X., and Ahlquist, P.  Filling a GAP(DH) in Asymmetric Viral RNA Synthesis.  Cell Host Microbe, 3:  124-125, 2008.

Westgate, E. J., Cheng, Y., Reilly, D. F., Price, T. S., Walisser, J. A., Bradfield, C. A., and FitzGerald, G. A.  Genetic Components of the Circadian Clock Regulate Thrombogenesis In Vivo.  Circulation, 117:  2087-2095, 2008.

Woditschka, S., Haag, J. D., Mau, B., Lubet, R. A., and Gould, M. N.  Chemopreventive Effects of Celecoxib Are Limited to Hormonally Responsive Mammary Carcinomas in the neu-Induced Retroviral Rat Model.  Breast Cancer Res., 10:R18, 2008.

Zhu, Y., Zhu, Y., and Xu, W.  EzArray:  A Web-Based Highly Automated Affymetrix Expression Array Data Management and Analysis System.  BMC Bioinformatics, 9:46, 2008.